If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ), 'gf_id' => 'HOM05D000706', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000706' ), 'data_identifier' => 'HOM05D000706', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000706', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '813', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p40950' => 'bna', 'A03p48130' => 'bna', 'A07p02570' => 'bna', 'A07p37590' => 'bna', 'A09p08390' => 'bna', 'A09p11010' => 'bna', 'A09p44170' => 'bna', 'Aa31LG11G2890' => 'aar', 'Aa31LG1G18150' => 'aar', 'Aa31LG3G18110' => 'aar', 'Aa31LG4G19210' => 'aar', 'Aa31LG8G13810' => 'aar', 'Aa31LG8G15250' => 'aar', 'Aa31LG9G15790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3144' => 'aag', 'Actinidia00570' => 'ach', 'Actinidia01625' => 'ach', 'Actinidia11771' => 'ach', 'Actinidia16541' => 'ach', 'Actinidia23003' => 'ach', 'Actinidia23004' => 'ach', 'Actinidia23005' => 'ach', 'Actinidia26079' => 'ach', 'Actinidia30853' => 'ach', 'Actinidia30854' => 'ach', 'Actinidia31014' => 'ach', 'Actinidia31015' => 'ach', 'Ah.01g019000' => 'amhyb', 'Ah.01g019010' => 'amhyb', 'Ah.02g117720' => 'amhyb', 'Ah.02g124650' => 'amhyb', 'Ah.02g124660' => 'amhyb', 'Ah.03g141560' => 'amhyb', 'Ah.06g188410' => 'amhyb', 'Ah.06g188540' => 'amhyb', 'Ah.06g188550' => 'amhyb', 'AL3G51260' => 'aly', 'AL3G52680' => 'aly', 'AL5G31540' => 'aly', 'AL6G18900' => 'aly', 'AL6G34760' => 'aly', 'AL8G40850' => 'aly', 'Aqoxy4G01481' => 'aox', 'Aqoxy4G01705' => 'aox', 'Aqoxy5G01350_Aqoxy5G01351' => 'aox', 'Aqoxy5G01492' => 'aox', 'Aqoxy5G01493' => 'aox', 'Aqoxy6G02384' => 'aox', 'Aqoxy7G00126_Aqoxy7G00127' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2RX12T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KND2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6C73LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AR939I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FL369X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQ3BES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ2XS5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JT5ALL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX39Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MF3J08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS53IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MSJ6DP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MV74CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V4KEVW' => 'arhy', 'AT2G16485' => 'ath', 'AT2G18090' => 'ath', 'AT3G51120' => 'ath', 'AT5G08430' => 'ath', 'AT5G23480' => 'ath', 'AT5G63700' => 'ath', 'ATR0620G061' => 'atr', 'ATR1089G079' => 'atr', 'ATR1089G135' => 'atr', 'Atru.chr3.765' => 'acertr', 'Atru.chr4.14_Atru.chr4.15' => 'acertr', 'Atru.chr5.3136' => 'acertr', 'Atru.chr6.355' => 'acertr', 'Atru.chr6.356' => 'acertr', 'Atru.chr6.382' => 'acertr', 'Atru.chr6.383' => 'acertr', 'Atru.chr6.385' => 'acertr', 'Atru.chr6.386' => 'acertr', 'Atru.chr6.434_Atru.chr6.435' => 'acertr', 'Atru.chr7.1194' => 'acertr', 'Atru.chr7.982' => 'acertr', 'Atru.chr7.983' => 'acertr', 'Atru.chr7.985' => 'acertr', 'AUR62000556' => 'cqu', 'AUR62000570' => 'cqu', 'AUR62006908' => 'cqu', 'AUR62006923' => 'cqu', 'AUR62007650' => 'cqu', 'AUR62010399' => 'cqu', 'AUR62010423' => 'cqu', 'AUR62014255' => 'cqu', 'AUR62038478' => 'cqu', 'BcaB01g00548' => 'bca', 'BcaB03g16364' => 'bca', 'BcaB03g16365' => 'bca', 'BcaB03g16593' => 'bca', 'BcaB07g29880' => 'bca', 'BcaB07g31686' => 'bca', 'BcaB07g31760' => 'bca', 'BcaB07g31761' => 'bca', 'BcaB07g31764' => 'bca', 'BcaB07g31767' => 'bca', 'BcaB07g31768' => 'bca', 'BcaB07g31769' => 'bca', 'BcaB08g34790' => 'bca', 'BcaC03g13230' => 'bca', 'BcaC04g22931' => 'bca', 'BcaC04g23016' => 'bca', 'BcaC06g33055' => 'bca', 'BcaC07g39587' => 'bca', 'BcaC08g46559' => 'bca', 'BcaC09g50082' => 'bca', 'BcaNung03856' => 'bca', 'BolC1t02856H' => 'bol', 'BolC1t02857H' => 'bol', 'BolC2t06321H' => 'bol', 'BolC2t12136H' => 'bol', 'BolC6t39591H' => 'bol', 'BolC7t42139H' => 'bol', 'BolC7t45133H' => 'bol', 'BolC8t50257H' => 'bol', 'BolC9t53862H' => 'bol', 'BolC9t54195H' => 'bol', 'BraA02t04959Z' => 'bra', 'BraA02t09041Z' => 'bra', 'BraA03t13920Z' => 'bra', 'BraA07t28056Z' => 'bra', 'BraA07t31320Z' => 'bra', 'BraA09t36489Z' => 'bra', 'BraA09t36741Z' => 'bra', 'BraA09t39878Z' => 'bra', 'C01p24690' => 'bna', 'C01p29300' => 'bna', 'C02p03620' => 'bna', 'C02p60840' => 'bna', 'C06p45350' => 'bna', 'C07p04820' => 'bna', 'C07p04830' => 'bna', 'C07p46170' => 'bna', 'C08p26390' => 'bna', 'C09p09500' => 'bna', 'C09p13020' => 'bna', 'CAN.G145.4' => 'can', 'CAN.G145.5' => 'can', 'CAN.G145.6' => 'can', 'CAN.G145.7' => 'can', 'CAN.G170.123' => 'can', 'CAN.G186.24' => 'can', 'CAN.G358.3' => 'can', 'CAN.G693.2' => 'can', 'CAN.G693.3' => 'can', 'CAN.G785.8' => 'can', 'CAN.G855.27' => 'can', 'CAN.G855.29' => 'can', 'CAN.G855.30' => 'can', 'CANSAT01G1453' => 'cansat', 'CANSAT11G1190' => 'cansat', 'CANSAT56G1438' => 'cansat', 'CANSAT56G3698' => 'cansat', 'CARHR056810' => 'chi', 'CARHR106710' => 'chi', 'CARHR108570' => 'chi', 'CARHR160720' => 'chi', 'CARHR190040' => 'chi', 'CARHR204580' => 'chi', 'CARHR277610' => 'chi', 'CARHR277620' => 'chi', 'Carub.0003s3025' => 'cru', 'Carub.0003s3222' => 'cru', 'Carub.0005s1752' => 'cru', 'Carub.0006s0735' => 'cru', 'Carub.0006s2126' => 'cru', 'Carub.0008s2447' => 'cru', 'Ca_09460_v3' => 'car', 'Ca_15336_v3' => 'car', 'Ca_17061_v3' => 'car', 'Ca_24896_v3' => 'car', 'Ca_24897_v3' => 'car', 'Ca_25266_v3' => 'car', 'Ca_28079_v3' => 'car', 'CBR_g54814' => 'cbr', 'Cc02_g04760' => 'ccan', 'Cc02_g16990' => 'ccan', 'Cc02_g23430' => 'ccan', 'Cc02_g27610' => 'ccan', 'Cc02_g27620' => 'ccan', 'Cc07_g10400' => 'ccan', 'Cc07_g10410' => 'ccan', 'Cc07_g19870' => 'ccan', 'CDE05G3431' => 'cde', 'CDE06G0276' => 'cde', 'CDE06G1200' => 'cde', 'CDE08G0316' => 'cde', 'CDE09G1200' => 'cde', 'Cfa003743' => 'cfa', 'Cfa006940' => 'cfa', 'Cfa010509' => 'cfa', 'Cfa019817' => 'cfa', 'Ciclev10000408m.g' => 'ccl', 'Ciclev10004009m.g' => 'ccl', 'Ciclev10024691m.g' => 'ccl', 'Ciclev10026382m.g' => 'ccl', 'Ciclev10027183m.g' => 'ccl', 'Ciclev10027673m.g' => 'ccl', 'CiPaw.01G081800' => 'cil', 'CiPaw.06G000900' => 'cil', 'CiPaw.06G001000' => 'cil', 'CiPaw.08G135500' => 'cil', 'CiPaw.08G135700' => 'cil', 'CiPaw.14G035600' => 'cil', 'CiPaw.14G035800' => 'cil', 'ClCG02G004620' => 'cla', 'ClCG05G000180' => 'cla', 'ClCG07G008850' => 'cla', 'ClCG09G022920' => 'cla', 'ClCG09G022930' => 'cla', 'ClCG10G007330' => 'cla', 'COL.COLO4_12141' => 'col', 'COL.COLO4_17687' => 'col', 'COL.COLO4_21963' => 'col', 'COL.COLO4_26035' => 'col', 'COL.COLO4_35473' => 'col', 'Cpa.g.c41117' => 'cpa', 'Cpa.g.c46116' => 'cpa', 'Cpa.g.sc12.29' => 'cpa', 'Cpa.g.sc150.23' => 'cpa', 'Cpa.g.sc150.24' => 'cpa', 'Cpa.g.sc33.155' => 'cpa', 'Cpa.g.sc33.157' => 'cpa', 'Cpa.g.sc6.213' => 'cpa', 'Cpa.g.sc86.38' => 'cpa', 'CsaV3_3G006570' => 'csa', 'CsaV3_3G007310' => 'csa', 'CsaV3_4G005330' => 'csa', 'CsaV3_7G000340' => 'csa', 'CsaV3_7G023180' => 'csa', 'CSS0019849' => 'camsi', 'CSS0020172' => 'camsi', 'CSS0021670' => 'camsi', 'CSS0022868' => 'camsi', 'CSS0038338' => 'camsi', 'CSS0041679' => 'camsi', 'CSS0048501' => 'camsi', 'CSS0050455' => 'camsi', 'DCAR_006657' => 'dca', 'DCAR_015680' => 'dca', 'DCAR_017341' => 'dca', 'DCAR_022912' => 'dca', 'Dinv09371' => 'din', 'Dinv16460' => 'din', 'Dinv23460' => 'din', 'Dinv29666' => 'din', 'Dinv33601' => 'din', 'Dinv40057' => 'din', 'Dinv42005' => 'din', 'Duzib052G0725' => 'dzi', 'Duzib132G0489' => 'dzi', 'Duzib132G0594' => 'dzi', 'Duzib147G0053' => 'dzi', 'Duzib147G0672' => 'dzi', 'Duzib177G0677' => 'dzi', 'Duzib187G0171' => 'dzi', 'Duzib248G0445' => 'dzi', 'Duzib264G0704' => 'dzi', 'ECA232G1998' => 'eca', 'ECA233G0027' => 'eca', 'ECA233G4053' => 'eca', 'ECA238G3314' => 'eca', 'ECA246G1141' => 'eca', 'ECA246G4574' => 'eca', 'EL10Ac4g09662' => 'bvu', 'EL10Ac4g09693' => 'bvu', 'EL10Ac6g14021' => 'bvu', 'EL10Ac9g21648' => 'bvu', 'EL10As8g23851' => 'bvu', 'EL10As8g23852' => 'bvu', 'Eucgr.G01725' => 'egr', 'Eucgr.H05064' => 'egr', 'Eucgr.H05066' => 'egr', 'Eucgr.J00652' => 'egr', 'Eucgr.J02395' => 'egr', 'FAN02G1683' => 'fan', 'FAN02G3531' => 'fan', 'FAN02G3880' => 'fan', 'FAN04G0394' => 'fan', 'FAN05G2021' => 'fan', 'FAN05G3552' => 'fan', 'FAN05G5587' => 'fan', 'FAN06G0551' => 'fan', 'FAN06G0903' => 'fan', 'FAN08G1872' => 'fan', 'FAN08G2870' => 'fan', 'FAN09G2905' => 'fan', 'FAN10G2685' => 'fan', 'FAN11G1103' => 'fan', 'FAN13G3104' => 'fan', 'FAN14G2252' => 'fan', 'FAN14G2852' => 'fan', 'FAN15G1757' => 'fan', 'FAN16G1967' => 'fan', 'FAN18G0321' => 'fan', 'FAN18G3885' => 'fan', 'FAN19G1544' => 'fan', 'FAN19G2540' => 'fan', 'FAN19G2550' => 'fan', 'FAN20G0265' => 'fan', 'FAN20G1350' => 'fan', 'FAN21G3224' => 'fan', 'FAN21G3551' => 'fan', 'FAN23G0142' => 'fan', 'FAN23G0695' => 'fan', 'FAN23G1421' => 'fan', 'FAN24G0635' => 'fan', 'FAN24G2809' => 'fan', 'FAN26G0079' => 'fan', 'FAN26G0297' => 'fan', 'FAN26G1200' => 'fan', 'FAN26G2655' => 'fan', 'FAN27G2281' => 'fan', 'FAN27G2992' => 'fan', 'FAN28G1501' => 'fan', 'FAN28G2355' => 'fan', 'FvH4_1g05690' => 'fve', 'FvH4_1g12170' => 'fve', 'FvH4_1g25810' => 'fve', 'FvH4_2g10320' => 'fve', 'FvH4_2g12310' => 'fve', 'FvH4_3g08570' => 'fve', 'FvH4_3g26471' => 'fve', 'FvH4_3g26472' => 'fve', 'FvH4_3g26473' => 'fve', 'FvH4_4g12500' => 'fve', 'FvH4_5g30650' => 'fve', 'FvH4_5g35250' => 'fve', 'FvH4_6g08140' => 'fve', 'FvH4_6g19471' => 'fve', 'FvH4_6g52630' => 'fve', 'FvH4_7g09440' => 'fve', 'Glyma.01G168900' => 'gma', 'Glyma.01G169000' => 'gma', 'Glyma.03G250500' => 'gma', 'Glyma.04G008500' => 'gma', 'Glyma.06G008300' => 'gma', 'Glyma.09G158300' => 'gma', 'Glyma.11G074400' => 'gma', 'Glyma.11G074600' => 'gma', 'Glyma.11G208500' => 'gma', 'Glyma.16G208800' => 'gma', 'Gohir.A02G169000' => 'ghi', 'Gohir.A03G129600' => 'ghi', 'Gohir.A03G198900' => 'ghi', 'Gohir.A04G134200' => 'ghi', 'Gohir.A08G223000' => 'ghi', 'Gohir.A10G097500' => 'ghi', 'Gohir.A11G042625' => 'ghi', 'Gohir.A11G042650' => 'ghi', 'Gohir.A11G177900' => 'ghi', 'Gohir.D01G066700' => 'ghi', 'Gohir.D01G081300' => 'ghi', 'Gohir.D02G104601' => 'ghi', 'Gohir.D02G153300' => 'ghi', 'Gohir.D02G220300' => 'ghi', 'Gohir.D03G011000' => 'ghi', 'Gohir.D03G122500' => 'ghi', 'Gohir.D04G103400' => 'ghi', 'Gohir.D04G103500' => 'ghi', 'Gohir.D04G177400' => 'ghi', 'Gohir.D06G127100' => 'ghi', 'Gohir.D06G138051' => 'ghi', 'Gohir.D07G236200' => 'ghi', 'Gohir.D08G243300' => 'ghi', 'Gohir.D09G037400' => 'ghi', 'Gohir.D09G143401' => 'ghi', 'Gohir.D10G090700' => 'ghi', 'Gohir.D11G046150' => 'ghi', 'Gohir.D11G185700' => 'ghi', 'Gohir.D13G142000' => 'ghi', 'Gorai.003G011400' => 'gra', 'Gorai.003G172900' => 'gra', 'Gorai.004G259200' => 'gra', 'Gorai.005G172400' => 'gra', 'Gorai.005G248200' => 'gra', 'Gorai.007G049500' => 'gra', 'Gorai.007G197200' => 'gra', 'Gorai.007G356500' => 'gra', 'Gorai.009G407100' => 'gra', 'Gorai.010G148400' => 'gra', 'Gorai.011G099700' => 'gra', 'Gorai.012G170300' => 'gra', 'GSVIVG01000269001' => 'vvi', 'GSVIVG01000270001' => 'vvi', 'GSVIVG01000271001' => 'vvi', 'GSVIVG01018827001' => 'vvi', 'GSVIVG01023170001' => 'vvi', 'GSVIVG01023195001' => 'vvi', 'GSVIVG01023196001' => 'vvi', 'GSVIVG01023197001' => 'vvi', 'GSVIVG01024181001' => 'vvi', 'HanXRQChr01g0026651' => 'han', 'HanXRQChr03g0065801' => 'han', 'HanXRQChr09g0260881' => 'han', 'HanXRQChr10g0285881' => 'han', 'HanXRQChr10g0285891' => 'han', 'HanXRQChr13g0391771' => 'han', 'HanXRQChr13g0414741' => 'han', 'HanXRQChr13g0414751' => 'han', 'HanXRQChr13g0414771' => 'han', 'HanXRQChr14g0441381' => 'han', 'HanXRQChr15g0465191' => 'han', 'HanXRQChr15g0465201' => 'han', 'HanXRQChr15g0471611' => 'han', 'HanXRQChr15g0471621' => 'han', 'HanXRQChr16g0506021' => 'han', 'HanXRQChr16g0531121' => 'han', 'HanXRQChr17g0544101' => 'han', 'HanXRQChr17g0552561' => 'han', 'Haze_00953' => 'cav', 'Haze_02984' => 'cav', 'Haze_03438' => 'cav', 'Haze_03439' => 'cav', 'Haze_03809' => 'cav', 'Haze_15725' => 'cav', 'Haze_18712' => 'cav', 'Hma1.2p1_0157F.1_g069010' => 'hma', 'Hma1.2p1_0157F.1_g069020' => 'hma', 'Hma1.2p1_0266F.1_g106930' => 'hma', 'Hma1.2p1_0314F.1_g121820' => 'hma', 'Hma1.2p1_0743F.1_g211440' => 'hma', 'Hma1.2p1_0851F.1_g228220' => 'hma', 'Hma1.2p1_1368F.1_g278552' => 'hma', 'Hma1.2p1_1368F.1_g278554' => 'hma', 'Hma1.2p1_1490F.1_g286680' => 'hma', 'Hma1.2p1_2365F.1_g320670' => 'hma', 'HPP92_000726' => 'vpl', 'HPP92_000727' => 'vpl', 'HPP92_000728' => 'vpl', 'HPP92_001344' => 'vpl', 'HPP92_001425' => 'vpl', 'HPP92_001426' => 'vpl', 'HPP92_002466' => 'vpl', 'HPP92_002467' => 'vpl', 'HPP92_025447' => 'vpl', 'Hund06279' => 'sun', 'Hund07199' => 'sun', 'Hund07206' => 'sun', 'Hund14029' => 'sun', 'Hund16475' => 'sun', 'Lalb_Chr04g0262091' => 'lal', 'Lalb_Chr05g0212471' => 'lal', 'Lalb_Chr09g0321941' => 'lal', 'Lalb_Chr09g0321951' => 'lal', 'Lalb_Chr09g0321961' => 'lal', 'Lalb_Chr16g0377621' => 'lal', 'Lalb_Chr18g0053791' => 'lal', 'Lalb_Chr18g0053811' => 'lal', 'Lalb_Chr18g0053841' => 'lal', 'Lalb_Chr18g0053861' => 'lal', 'Lalb_Chr22g0354241' => 'lal', 'Lalb_Chr22g0354251' => 'lal', 'Lalb_Chr22g0354261' => 'lal', 'Lalb_Chr23g0265171' => 'lal', 'Lalb_Chr23g0265181' => 'lal', 'Lalb_Chr24g0398661' => 'lal', 'Lalb_Chr24g0398681' => 'lal', 'Lj1g0002727' => 'lja', 'Lj1g0007134' => 'lja', 'Lj2A462G17' => 'lonja', 'Lj2A462T21' => 'lonja', 'Lj2g0014541' => 'lja', 'Lj2g0017487' => 'lja', 'Lj2g0025009' => 'lja', 'Lj4A215G51' => 'lonja', 'Lj5A276T86' => 'lonja', 'Lj5C190G5' => 'lonja', 'Lj6g0002814' => 'lja', 'Lj6g0005324' => 'lja', 'Lj6g0020681' => 'lja', 'Lj6g0025449' => 'lja', 'Lj9A282T34' => 'lonja', 'Lj9A382G59' => 'lonja', 'Lj9A382T65' => 'lonja', 'Lsat_1_v5_gn_0_3661' => 'lsa', 'Lsat_1_v5_gn_2_40301' => 'lsa', 'Lsat_1_v5_gn_2_71601' => 'lsa', 'Lsat_1_v5_gn_2_78401' => 'lsa', 'Lsat_1_v5_gn_3_44121' => 'lsa', 'Lsat_1_v5_gn_3_73641' => 'lsa', 'Lsat_1_v5_gn_4_152920' => 'lsa', 'Lsat_1_v5_gn_8_128721' => 'lsa', 'Lsat_1_v5_gn_9_121500' => 'lsa', 'Manes.01G142800' => 'mes', 'Manes.02G101200' => 'mes', 'Manes.04G084000' => 'mes', 'Manes.10G110800' => 'mes', 'Manes.13G079400' => 'mes', 'Manes.17G021800' => 'mes', 'Mapoly0157s0010' => 'mpo', 'MBI03_g29110_MAGBIO' => 'mbi', 'MBI05_g33091_MAGBIO' => 'mbi', 'MBI05_g44712_MAGBIO' => 'mbi', 'MBI15_g42530_MAGBIO' => 'mbi', 'MD00G1040500' => 'mdo', 'MD02G1135700' => 'mdo', 'MD05G1023400' => 'mdo', 'MD08G1222000' => 'mdo', 'MD10G1064000' => 'mdo', 'MD15G1140400' => 'mdo', 'MD15G1249200' => 'mdo', 'MD15G1414400' => 'mdo', 'MD15G1414500' => 'mdo', 'MD15G1440700' => 'mdo', 'MD15G1440800' => 'mdo', 'Medtr3g064250' => 'mtr', 'Medtr3g064260' => 'mtr', 'Medtr3g064270' => 'mtr', 'Medtr3g064280' => 'mtr', 'Medtr3g064290' => 'mtr', 'Medtr3g064300' => 'mtr', 'Medtr3g117490' => 'mtr', 'Medtr5g021450' => 'mtr', 'Medtr5g021500' => 'mtr', 'Medtr6g065790' => 'mtr', 'MELO3C005950.2' => 'cme', 'MELO3C012577.2' => 'cme', 'MELO3C013424.2' => 'cme', 'MELO3C016482.2' => 'cme', 'MELO3C017537.2' => 'cme', 'Migut.B00181' => 'egut', 'Migut.B00732' => 'egut', 'Migut.B01326' => 'egut', 'Migut.H02481' => 'egut', 'Migut.L00038' => 'egut', 'MSTRG.16476' => 'ama', 'MSTRG.23284' => 'ama', 'MSTRG.2507' => 'ama', 'Nitab4.5_0000023g0120' => 'nta', 'Nitab4.5_0000136g0060' => 'nta', 'Nitab4.5_0000492g0090' => 'nta', 'Nitab4.5_0000634g0010' => 'nta', 'Nitab4.5_0000753g0060' => 'nta', 'Nitab4.5_0001057g0200' => 'nta', 'Nitab4.5_0001907g0050' => 'nta', 'Nitab4.5_0002026g0070' => 'nta', 'Nitab4.5_0002546g0030' => 'nta', 'Nitab4.5_0002649g0040' => 'nta', 'Nitab4.5_0003361g0020' => 'nta', 'Nitab4.5_0004431g0010' => 'nta', 'Nitab4.5_0005814g0020' => 'nta', 'Nitab4.5_0006358g0040' => 'nta', 'Nitab4.5_0008576g0030' => 'nta', 'Nitab4.5_0010830g0010' => 'nta', 'Nitab4.5_0016410g0010' => 'nta', 'Nitab4.5_0016410g0020' => 'nta', 'Nn2g12019' => 'nnu', 'Nn5g29211' => 'nnu', 'Oeu000148.1' => 'oeu', 'Oeu012301.1' => 'oeu', 'Oeu020692.1' => 'oeu', 'Oeu021939.1' => 'oeu', 'Oeu036637.1' => 'oeu', 'Oeu046136.1' => 'oeu', 'Oeu052726.1' => 'oeu', 'Oeu055627.1' => 'oeu', 'Oeu058645.1' => 'oeu', 'Oeu064260.1' => 'oeu', 'Os01g0884500' => 'osa', 'Os03g0112600' => 'osa', 'Os03g0112700' => 'osa', 'Os05g0354075' => 'osa', 'Os05g0420800' => 'osa', 'Os09g0530500' => 'osa', 'Os10g0511800' => 'osa', 'Os10g0511900' => 'osa', 'Peaxi162Scf00010g00517' => 'pax', 'Peaxi162Scf00011g01540' => 'pax', 'Peaxi162Scf00029g02619' => 'pax', 'Peaxi162Scf00083g01229' => 'pax', 'Peaxi162Scf00152g01634' => 'pax', 'Peaxi162Scf00428g00818' => 'pax', 'Peaxi162Scf00428g00822' => 'pax', 'Peaxi162Scf00968g00212' => 'pax', 'Peaxi162Scf00968g00215' => 'pax', 'Peaxi162Scf01385g00034' => 'pax', 'PGR042G1088' => 'pgr', 'PGR102G2187' => 'pgr', 'PGR102G2630' => 'pgr', 'PGR119G0579' => 'pgr', 'PGR119G1836' => 'pgr', 'PGSC0003DMG400003622' => 'stu', 'PGSC0003DMG400006879' => 'stu', 'PGSC0003DMG400010785' => 'stu', 'PGSC0003DMG400022537' => 'stu', 'PGSC0003DMG400024878' => 'stu', 'PGSC0003DMG400024880' => 'stu', 'PGSC0003DMG400024881' => 'stu', 'PGSC0003DMG400040533' => 'stu', 'PGSC0003DMG401012010' => 'stu', 'PGSC0003DMG402012010' => 'stu', 'Phvul.002G111600' => 'pvu', 'Phvul.002G111700' => 'pvu', 'Phvul.004G133700' => 'pvu', 'Phvul.006G085500' => 'pvu', 'Phvul.006G085511' => 'pvu', 'Phvul.006G085533' => 'pvu', 'Phvul.006G085700' => 'pvu', 'Phvul.006G087011' => 'pvu', 'Phvul.006G105100' => 'pvu', 'Phvul.009G003300' => 'pvu', 'Potri.001G305900' => 'ptr', 'Potri.004G133600' => 'ptr', 'Potri.004G161700' => 'ptr', 'Potri.005G117300' => 'ptr', 'Potri.007G016000' => 'ptr', 'Potri.009G123800' => 'ptr', 'Potri.011G078050' => 'ptr', 'Pp3c15_12580' => 'ppa', 'Pp3c15_12700' => 'ppa', 'Pp3c6_16650' => 'ppa', 'Prupe.1G559800' => 'ppe', 'Prupe.1G582800' => 'ppe', 'Prupe.4G286800' => 'ppe', 'Prupe.7G165000' => 'ppe', 'Prupe.8G085700' => 'ppe', 'Psat0s3997g0080' => 'psa', 'Psat1g116560' => 'psa', 'Psat2g155760' => 'psa', 'Psat3g006680' => 'psa', 'Psat5g004280' => 'psa', 'Psat5g143560' => 'psa', 'Psat5g143680' => 'psa', 'Psat5g143720' => 'psa', 'PSO081G0098' => 'pso', 'PSO170G6368' => 'pso', 'PSO210G2352' => 'pso', 'PSO210G5296' => 'pso', 'PSO357G0320' => 'pso', 'PSO447G0242' => 'pso', 'PSO541G1600' => 'pso', 'PSO675G4911' => 'pso', 'QL02p102384' => 'qlo', 'QL02p103021' => 'qlo', 'QL05p016712' => 'qlo', 'QL05p016726' => 'qlo', 'QL05p071871' => 'qlo', 'QL06p033989' => 'qlo', 'QL09p026796' => 'qlo', 'RcHm_v2.0_Chr1g0336751' => 'rch', 'RcHm_v2.0_Chr1g0346081' => 'rch', 'RcHm_v2.0_Chr1g0380461' => 'rch', 'RcHm_v2.0_Chr2g0091341' => 'rch', 'RcHm_v2.0_Chr2g0099921' => 'rch', 'RcHm_v2.0_Chr2g0099931' => 'rch', 'RcHm_v2.0_Chr3g0458001' => 'rch', 'RcHm_v2.0_Chr3g0484911' => 'rch', 'RcHm_v2.0_Chr3g0484921' => 'rch', 'RcHm_v2.0_Chr5g0009271' => 'rch', 'RcHm_v2.0_Chr6g0267521' => 'rch', 'RcHm_v2.0_Chr6g0272281' => 'rch', 'RcHm_v2.0_Chr6g0272291' => 'rch', 'RcHm_v2.0_Chr7g0225511' => 'rch', 'RcHm_v2.0_Chr7g0230561' => 'rch', 'RcHm_v2.0_Chr7g0230571' => 'rch', 'RcHm_v2.0_Chr7g0236391' => 'rch', 'Rhsim06G0200300' => 'rsi', 'Rhsim08G0035300' => 'rsi', 'Rhsim09G0000400' => 'rsi', 'Rhsim11G0183100' => 'rsi', 'Rhsim12G0008900' => 'rsi', 'Sabra04G0084500' => 'sbr', 'Sabra04G0108700' => 'sbr', 'Sabra05G0096300' => 'sbr', 'Sabra07G0013200' => 'sbr', 'Sabra16G0192200' => 'sbr', 'SalBow6G2696' => 'sbo', 'SalBow8G0912' => 'sbo', 'SalBow8G2798' => 'sbo', 'Sc03g0003430' => 'sci', 'Sc08g0000830' => 'sci', 'Sc16g0002380' => 'sci', 'Sc16g0009690' => 'sci', 'Sc16g0009760' => 'sci', 'Sed0003996' => 'sed', 'Sed0004427' => 'sed', 'Sed0009552' => 'sed', 'Sed0010303' => 'sed', 'Sed0010772' => 'sed', 'Sed0017742' => 'sed', 'Sed0019522' => 'sed', 'Sed0026228' => 'sed', 'Sed0026982' => 'sed', 'SEGI_23408' => 'sgi', 'SEGI_24175' => 'sgi', 'SEGI_33673' => 'sgi', 'SGA_v2.0_scaffold131G34398' => 'sas', 'SGA_v2.0_scaffold167G38452' => 'sas', 'SGA_v2.0_scaffold272G46388' => 'sas', 'SGA_v2.0_scaffold2G01247' => 'sas', 'SGA_v2.0_scaffold2G01248' => 'sas', 'SGA_v2.0_scaffold32G13215' => 'sas', 'SGA_v2.0_scaffold51G18779' => 'sas', 'SHI05605' => 'shi', 'SHI05608' => 'shi', 'SHI08584' => 'shi', 'SHI08585' => 'shi', 'SHI11424' => 'shi', 'SHI25320' => 'shi', 'SHI25321' => 'shi', 'SHI25322' => 'shi', 'SHI49238' => 'shi', 'SMO174G0109' => 'smo', 'Solyc01g086940.2' => 'sly', 'Solyc01g086950.4' => 'sly', 'Solyc01g103250.4' => 'sly', 'Solyc01g103310.4' => 'sly', 'Solyc01g103340.4' => 'sly', 'Solyc01g150153.1' => 'sly', 'Solyc02g062370.4' => 'sly', 'Solyc02g084510.3' => 'sly', 'Solyc02g084520.3' => 'sly', 'Solyc03g033630.3' => 'sly', 'Solyc11g062220.2' => 'sly', 'Sopen01g033940' => 'spe', 'Sopen01g045670' => 'spe', 'Sopen01g045690' => 'spe', 'Sopen01g045700' => 'spe', 'Sopen01g045710' => 'spe', 'Sopen02g013360' => 'spe', 'Sopen02g013370' => 'spe', 'Sopen02g029200' => 'spe', 'Sopen03g006420' => 'spe', 'Sopen11g024210' => 'spe', 'Sopen11g024220' => 'spe', 'Sp2g23700' => 'spa', 'Sp2g26800' => 'spa', 'Sp3g29760' => 'spa', 'Sp3g31520' => 'spa', 'Sp5g11090' => 'spa', 'Sp5g26430' => 'spa', 'Sp6g34490' => 'spa', 'TAR376G1119' => 'tar', 'TAR381G1479' => 'tar', 'TAR625G0367' => 'tar', 'TAR628G0617' => 'tar', 'TAR628G1033' => 'tar', 'TAR628G1460' => 'tar', 'TAR633G2556' => 'tar', 'THA.LOC104800303' => 'tha', 'THA.LOC104807483' => 'tha', 'THA.LOC104818393' => 'tha', 'THA.LOC104819187' => 'tha', 'THA.LOC104826608' => 'tha', 'Thecc.01G023200' => 'tca', 'Thecc.01G144400' => 'tca', 'Thecc.02G012800' => 'tca', 'Thecc.02G076000' => 'tca', 'Thecc.02G302300' => 'tca', 'Thecc.05G211200' => 'tca', 'Thhalv10001877m.g' => 'esa', 'Thhalv10003959m.g' => 'esa', 'Thhalv10003998m.g' => 'esa', 'Thhalv10010070m.g' => 'esa', 'Thhalv10013270m.g' => 'esa', 'Thhalv10016136m.g' => 'esa', 'Thhalv10022555m.g' => 'esa', 'TPR.G16311' => 'tpr', 'TPR.G23025' => 'tpr', 'TPR.G23221' => 'tpr', 'TPR.G2331' => 'tpr', 'TPR.G2360' => 'tpr', 'TPR.G28424' => 'tpr', 'TPR.G32171' => 'tpr', 'TPR.G32206' => 'tpr', 'TPR.G37369' => 'tpr', 'TPR.G6920' => 'tpr', 'TWI53G1717' => 'twi', 'TWI59G0710' => 'twi', 'TWI73G0969' => 'twi', 'TWI75G0983' => 'twi', 'TWI75G1073' => 'twi', 'TWI79G1627' => 'twi', 'unitig_26.g9164' => 'ugi', 'unitig_60.g25864' => 'ugi', 'unitig_736.g22634' => 'ugi', 'unitig_736.g22635' => 'ugi', 'unitig_899.g14628' => 'ugi', 'vmacro01003' => 'vma', 'vmacro02054' => 'vma', 'vmacro18690' => 'vma', 'vmacro19842' => 'vma', 'vmacro19843' => 'vma', 'vmacro21905' => 'vma', 'vmacro22093' => 'vma', 'vmacro23051' => 'vma', 'VMungo0540G0276' => 'vmu', 'VMungo0540G0587' => 'vmu', 'VMungo0540G2098' => 'vmu', 'VMungo0540G2253' => 'vmu', 'VMungo1215G2634' => 'vmu', 'VMungo1215G3412' => 'vmu', 'VMungo1309G2301' => 'vmu', 'Zm00001eb000870' => 'zma', 'Zm00001eb043720' => 'zma', 'Zm00001eb075610' => 'zma', 'Zm00001eb145560' => 'zma', 'Zm00001eb152970' => 'zma', 'Zm00001eb201070' => 'zma', 'Zm00001eb220400' => 'zma', 'Zm00001eb349090' => 'zma', 'Zm00001eb371050' => 'zma', 'Zm00001eb404070' => 'zma' ) $gf_id = 'HOM05D000706' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000706' ) $data_identifier = 'HOM05D000706' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 14, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 13, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 9, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 41, 'fve' => (int) 16, 'gma' => (int) 10, 'ghi' => (int) 29, 'gra' => (int) 12, 'vvi' => (int) 9, 'han' => (int) 18, 'cav' => (int) 7, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 17, 'lja' => (int) 9, 'lonja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 17, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1